| Protein ZmGRF13 | |
|---|---|
|
ZmGRF13 is a protein in the GRF family.
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| Information | |
| TF Name: | ZmGRF13 |
| Species: | Maize |
| TF Family: | GRF |
| Gene Name(Synonym): | GRFTF13 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmGRF13
ZmGRF13 is a protein in the GRF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF08879 | PF08880 | |
| Zm00001eb250620_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d017602 | DAPseq |  |
sequence | fimo | position |
| Zm00001d017602 | DAPseq |  |
sequence | fimo | position |
| Zm00001d017602 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d017602 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmGRF13 is the regulator
Interactions where ZmGRF13 is the target
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Zm00001eb250620_T001 from maize genome v5
Amino Acid Sequence
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MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF08880 |
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| PF08879 |
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| Hover here to show all domains | |
Nucleotide Sequence
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GTCGAGAACGAATGCTGTCTCTTCT...
GTCGAGAACGAATGCTGTCTCTTCTTCCCTTCTATCGAGAAGCTGCCCGCGCGCTCCCTCCGTAGAGTCCAAACCGCCACAGGAAGCGCAACAGCGGAGTCTCCAAAATGGCCGCCGAGGACAAGGAGACCGACTCGCCGCAGCCGCCGGCGAAGCTGCCCCGTCTCTCCTGCGCCGACACGAGCGCCGGAGTGGCGGCCTCGTCGCCTCTGGTTCTCGGGCTGGGCCTGGGGCTCGGCGGGGGCGGCGAGCGAGACGCGGATGCGTCCCCGGCAACGGCGACGCCCAAGAGGCCGTCAGCGCTGACGTTCATGCAGCAGCAGGAACTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCAGCGGGCGCGCCGGTGCCGGCGCACCTTGTGCTCCCTATCTGGAAGAGCGTCGCCGCGTCCTCCTTCGGCCCGCAGCGCTTCCCCTCGCTGATGGGCCTGGGGAGCCTGTGCTTCGACTACCGCAGCAGCATGGAGCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCCCGCGACGTGGTGCCGGGCCACAAGTACTGCGAGCGGCACGTCCACCGCGGCCGCGGCCGTTCAAGAAAGCCTGTGGAAGCCGCCGCCCCGGCGCCCAGCGCGGCGGCCGCCACCAGCCTCGGCGGCGGCCCCGTCCACCACACGGGCGGCGCGCCCCCGCCGCACGGGCTCGGCCTCTCCCCCACCAGCGTCCTCCTCGCCCACAGCGCCGCGCGTGCCACATGAGTAGAGCGCTGCGGGCCGACATCTTGGGCTGGGCCTCGGAATCACGAGGAGAAACGGAATCCGCAGGGATTACAATGTCGTGTGCGTGCTGTGATTTTTTTCACTCCCAAAAGTCGCAGCTTCTTAAAAAACCCGGTTTGGGACGTCCGATGGCATGTGTCGCTGGCAGCTGGTTCGCTGCGTTTGCTTCTCTGTTACGTGTGCATTGTATTGTTTTGCCTGCCTC
GRMZM2G045977_T01 from maize genome v3
Amino Acid Sequence
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MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
Nucleotide Sequence
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GTCACATTTTAATTTAAAAATAAAC...
GTCACATTTTAATTTAAAAATAAACTAGCTGAAATGCATGCTAGCTTGCCGCAACGACTCGGACACAGCTTTTACTTCCACGACCACAGATTCCCGTTGTTGGAGCGCAGACGCCGGCCGCAGACACAAGTTTACCGAGCGACCAGACGGCGGGAGCCGTCACGCATAAATATACCCACCACTTCACACTTCCTCTGTCGAGAACGAATGCTGTCTCTTCTTCCCTTCTATCGAGAAGCTGCCCGCGCGCTCCCTCCGTAGAGTCCAAACCGCCACAGGAAGCGCAACAGCGGAGTCTCCAAAATGGCCGCCGAGGACAAGGAGACCGACTCGCCGCAGCCGCCGGCGAAGCTGCCCCGTCTCTCCTGCGCCGACACGAGCGCCGGAGTGGCGGCCTCGTCGCCTCTGGTTCTCGGGCTGGGCCTGGGGCTCGGCGGGGGCGGCGAGCGAGACGCGGATGCGTCCCCGGCAACGGCGACGCCCAAGAGGCCGTCAGCGCTGACGTTCATGCAGCAGCAGGAACTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCAGCGGGCGCGCCGGTGCCGGCGCACCTTGTGCTCCCTATCTGGAAGAGCGTCGCCGCGTCCTCCTTCGGCCCGCAGCGCTTCCCCTCGCTGATGGGCCTGGGGAGCCTGTGCTTCGACTACCGCAGCAGCATGGAGCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCCCGCGACGTGGTGCCGGGCCACAAGTACTGCGAGCGGCACGTCCACCGCGGCCGCGGCCGTTCAAGAAAGCCTGTGGAAGCCGCCGCCCCGGCGCCCAGCGCGGCGGCCGCCACCAGCCTCGGCGGCGGCCCCGTCCACCACACGGGCGGCGCGCCCCCGCCGCACGGGCTCGGCCTCTCCCCCACCAGCGTCCTCCTCGCCCACAGCGCCGCGCGTGCCACATGAGTAGAGCGCTGCGGGCCGACATCTTGGGCTGGGCCTCGGAATCACGAGGAGAAACGGAATCCGCAGGGATTACAATGTCGTGTGCGTGCTGTGATTTTTTTCACTCCCAAAAGTCGCAGCTTCTTAAAAAACCCGGTTTGGGACGTCCGATGGCATGTGTCGCTGGCAGCTGGTTCGCTGCGTTTGCTTCTCTGTTACGTGTGCATTGTATTGTTTTGCCTGCCTC
GRMZM2G045977_T02 from maize genome v3
Amino Acid Sequence
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MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSRKH
Nucleotide Sequence
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CGCCGGCCGCAGACACAAGTTTACC...
CGCCGGCCGCAGACACAAGTTTACCGAGCGACCAGACGGCGGGAGCCGTCACGCATAAATATACCCACCACTTCACACTTCCTCTGTCGAGAACGAATGCTGTCTCTTCTTCCCTTCTATCGAGAAGCTGCCCGCGCGCTCCCTCCGTAGAGTCCAAACCGCCACAGGAAGCGCAACAGCGGAGTCTCCAAAATGGCCGCCGAGGACAAGGAGACCGACTCGCCGCAGCCGCCGGCGAAGCTGCCCCGTCTCTCCTGCGCCGACACGAGCGCCGGAGTGGCGGCCTCGTCGCCTCTGGTTCTCGGGCTGGGCCTGGGGCTCGGCGGGGGCGGCGAGCGAGACGCGGATGCGTCCCCGGCAACGGCGACGCCCAAGAGGCCGTCAGCGCTGACGTTCATGCAGCAGCAGGAACTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCAGCGGGCGCGCCGGTGCCGGCGCACCTTGTGCTCCCTATCTGGAAGAGCGTCGCCGCGTCCTCCTTCGGCCCGCAGCGCTTCCCCTCGCGTAAGCACTAAGCACCGACAACAGCTTCAGCCGCCCCCGGCCGATTTCTATTTGTTTTTGCGTTTGTACTGTCTTGCCGTATCGAATGAACGTGTTGCAGTGATGGGCCTGGGGAGCCTGTGCTTCGACTACCGCAGCAGCATGGAGCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCCCGCGACGTGGTGCCGGGCCACAAGTACTGCGAGCGGCACGTCCACC
Zm00001d017602_T001 from maize genome v4
Amino Acid Sequence
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MAAEDKETDSPQPPAKLPRLSCADTSAGVAASSPLVLGLGLGLGGGGERDADASPATATPKRPSALTFMQQQELEHQVLI
YRYFAAGAPVPAHLVLPIWKSVAASSFGPQRFPSLMGLGSLCFDYRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERH
VHRGRGRSRKPVEAAAPAPSAAAATSLGGGPVHHTGGAPPPHGLGLSPTSVLLAHSAARAT
Nucleotide Sequence
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GTCGAGAACGAATGCTGTCTCTTCT...
GTCGAGAACGAATGCTGTCTCTTCTTCCCTTCTATCGAGAAGCTGCCCGCGCGCTCCCTCCGTAGAGTCCAAACCGCCACAGGAAGCGCAACAGCGGAGTCTCCAAAATGGCCGCCGAGGACAAGGAGACCGACTCGCCGCAGCCGCCGGCGAAGCTGCCCCGTCTCTCCTGCGCCGACACGAGCGCCGGAGTGGCGGCCTCGTCGCCTCTGGTTCTCGGGCTGGGCCTGGGGCTCGGCGGGGGCGGCGAGCGAGACGCGGATGCGTCCCCGGCAACGGCGACGCCCAAGAGGCCGTCAGCGCTGACGTTCATGCAGCAGCAGGAACTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCAGCGGGCGCGCCGGTGCCGGCGCACCTTGTGCTCCCTATCTGGAAGAGCGTCGCCGCGTCCTCCTTCGGCCCGCAGCGCTTCCCCTCGCTGATGGGCCTGGGGAGCCTGTGCTTCGACTACCGCAGCAGCATGGAGCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCCCGCGACGTGGTGCCGGGCCACAAGTACTGCGAGCGGCACGTCCACCGCGGCCGCGGCCGTTCAAGAAAGCCTGTGGAAGCCGCCGCCCCGGCGCCCAGCGCGGCGGCCGCCACCAGCCTCGGCGGCGGCCCCGTCCACCACACGGGCGGCGCGCCCCCGCCGCACGGGCTCGGCCTCTCCCCCACCAGCGTCCTCCTCGCCCACAGCGCCGCGCGTGCCACATGAGTAGAGCGCTGCGGGCCGACATCTTGGGCTGGGCCTCGGAATCACGAGGAGAAACGGAATCCGCAGGGATTACAATGTCGTGTGCGTGCTGTGATTTTTTTCACTCCCAAAAGTCGCAGCTTCTTAAAAAACCCGGTTTGGGACGTCCGATGGCATGTGTCGCTGGCAGCTGGTTCGCTGCGTTTGCTTCTCTGTTACGTGTGCATTGTATTGTTTTGCCTGCCTC
Zm00001d017602_T002 from maize genome v4
Amino Acid Sequence
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MAAEDKETDSPQPPAKLPRLSCADTSAGKFTSGGLVASGSRAGPGARRGRRARRGCVPGNGDAQEAVSADVHAAAGTGAP
GAHLPLLRSGRAGAGAPCAPYLEERRRVLLRPAALPLADGPGEPVLRLPQQHGAGARAVPAHGRQEVAVLPRRGAGPQVL
RAARPPRPRPFKKACGSRRPGAQRGGRHQPRRRPRPPHGRRAPAARARPLPHQRPPRPQRRACHMSRALRADILGWASES
RGETESAGITMSCACCDFFHSQKSQLLKKPGLGRPMACVAGSWF
Nucleotide Sequence
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GAGAACGAATGCTGTCTCTTCTTCC...
GAGAACGAATGCTGTCTCTTCTTCCCTTCTATCGAGAAGCTGCCCGCGCGCTCCCTCCGTAGAGTCCAAACCGCCACAGGAAGCGCAACAGCGGAGTCTCCAAAATGGCCGCCGAGGACAAGGAGACCGACTCGCCGCAGCCGCCGGCGAAGCTGCCCCGTCTCTCCTGCGCCGACACGAGCGCCGGTAAGTTCACGAGTGGCGGCCTCGTCGCCTCTGGTTCTCGGGCTGGGCCTGGGGCTCGGCGGGGGCGGCGAGCGAGACGCGGATGCGTCCCCGGCAACGGCGACGCCCAAGAGGCCGTCAGCGCTGACGTTCATGCAGCAGCAGGAACTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCAGCGGGCGCGCCGGTGCCGGCGCACCTTGTGCTCCCTATCTGGAAGAGCGTCGCCGCGTCCTCCTTCGGCCCGCAGCGCTTCCCCTCGCTGATGGGCCTGGGGAGCCTGTGCTTCGACTACCGCAGCAGCATGGAGCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCCCGCGACGTGGTGCCGGGCCACAAGTACTGCGAGCGGCACGTCCACCGCGGCCGCGGCCGTTCAAGAAAGCCTGTGGAAGCCGCCGCCCCGGCGCCCAGCGCGGCGGCCGCCACCAGCCTCGGCGGCGGCCCCGTCCACCACACGGGCGGCGCGCCCCCGCCGCACGGGCTCGGCCTCTCCCCCACCAGCGTCCTCCTCGCCCACAGCGCCGCGCGTGCCACATGAGTAGAGCGCTGCGGGCCGACATCTTGGGCTGGGCCTCGGAATCACGAGGAGAAACGGAATCCGCAGGGATTACAATGTCGTGTGCGTGCTGTGATTTTTTTCACTCCCAAAAGTCGCAGCTTCTTAAAAAACCCGGTTTGGGACGTCCGATGGCATGTGTCGCTGGCAGCTGGTTC
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